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Gene : AT5G41030 A. thaliana

Gene ID  ? AT5G41030
Brief Description  TCP family transcription factor  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? TCP family transcription factor ; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (TAIR:AT3G27010.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G41030 0.5kb upstream 0.5kb upstream 1474   true Chr5: 16428206-16429679
AT5G41030 0.5kb upstream 0.5kb upstream 500   false Chr5: 16428206-16428705
AT5G41030 0.5kb downstream 0.5kb downstream 1474   true Chr5: 16428706-16430179
AT5G41030 0.5kb downstream 0.5kb downstream 500   false Chr5: 16429680-16430179
AT5G41030 1.0kb upstream 1.0kb upstream 1974   true Chr5: 16427706-16429679
AT5G41030 1.0kb upstream 1.0kb upstream 1000   false Chr5: 16427706-16428705
AT5G41030 1.0kb downstream 1.0kb downstream 1974   true Chr5: 16428706-16430679
AT5G41030 1.0kb downstream 1.0kb downstream 1000   false Chr5: 16429680-16430679
AT5G41030 3.0kb upstream 3.0kb upstream 3974   true Chr5: 16425706-16429679
AT5G41030 3.0kb upstream 3.0kb upstream 3000   false Chr5: 16425706-16428705
AT5G41030 3.0kb downstream 3.0kb downstream 3974   true Chr5: 16428706-16432679
AT5G41030 3.0kb downstream 3.0kb downstream 3000   false Chr5: 16429680-16432679

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139