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Gene : AT5G41330 A. thaliana

Gene ID  ? AT5G41330
Brief Description  BTB/POZ domain with WD40/YVTN repeat-like protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? BTB/POZ domain with WD40/YVTN repeat-like protein; FUNCTIONS IN: voltage-gated potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: voltage-gated potassium channel complex, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), BTB/POZ fold (InterPro:IPR011333), Potassium channel, voltage dependent, Kv, tetramerisation (InterPro:IPR003131), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT3G09030.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G41330 0.5kb upstream 0.5kb upstream 3178   true Chr5: 16535339-16538516
AT5G41330 0.5kb upstream 0.5kb upstream 500   false Chr5: 16538017-16538516
AT5G41330 0.5kb downstream 0.5kb downstream 3178   true Chr5: 16534839-16538016
AT5G41330 0.5kb downstream 0.5kb downstream 500   false Chr5: 16534839-16535338
AT5G41330 1.0kb upstream 1.0kb upstream 3678   true Chr5: 16535339-16539016
AT5G41330 1.0kb upstream 1.0kb upstream 1000   false Chr5: 16538017-16539016
AT5G41330 1.0kb downstream 1.0kb downstream 3678   true Chr5: 16534339-16538016
AT5G41330 1.0kb downstream 1.0kb downstream 1000   false Chr5: 16534339-16535338
AT5G41330 3.0kb upstream 3.0kb upstream 5678   true Chr5: 16535339-16541016
AT5G41330 3.0kb upstream 3.0kb upstream 3000   false Chr5: 16538017-16541016
AT5G41330 3.0kb downstream 3.0kb downstream 5678   true Chr5: 16532339-16538016
AT5G41330 3.0kb downstream 3.0kb downstream 3000   false Chr5: 16532339-16535338

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0