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Gene : AT5G42150 A. thaliana

Gene ID  ? AT5G42150
Brief Description  Glutathione S-transferase family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Glutathione S-transferase family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutaredoxin active site (InterPro:IPR011767), Thioredoxin-like fold (InterPro:IPR012336).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G42150 0.5kb upstream 0.5kb upstream 2919   true Chr5: 16845650-16848568
AT5G42150 0.5kb upstream 0.5kb upstream 500   false Chr5: 16845650-16846149
AT5G42150 0.5kb downstream 0.5kb downstream 2919   true Chr5: 16846150-16849068
AT5G42150 0.5kb downstream 0.5kb downstream 500   false Chr5: 16848569-16849068
AT5G42150 1.0kb upstream 1.0kb upstream 3419   true Chr5: 16845150-16848568
AT5G42150 1.0kb upstream 1.0kb upstream 1000   false Chr5: 16845150-16846149
AT5G42150 1.0kb downstream 1.0kb downstream 3419   true Chr5: 16846150-16849568
AT5G42150 1.0kb downstream 1.0kb downstream 1000   false Chr5: 16848569-16849568
AT5G42150 3.0kb upstream 3.0kb upstream 5419   true Chr5: 16843150-16848568
AT5G42150 3.0kb upstream 3.0kb upstream 3000   false Chr5: 16843150-16846149
AT5G42150 3.0kb downstream 3.0kb downstream 5419   true Chr5: 16846150-16851568
AT5G42150 3.0kb downstream 3.0kb downstream 3000   false Chr5: 16848569-16851568

Proteins

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2 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
00590 Arachidonic acid metabolism

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Expression

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0