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Gene : RAB1A A. thaliana

Gene ID  ? AT5G47200
Brief Description  RAB GTPase homolog 1A  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? RAB GTPase homolog 1A (RAB1A); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 1C (TAIR:AT4G17530.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? AtRabD2b encodes a Rab GTPase, which plays important roles in pollen development, germination and tube elongation.  Source: TAIR, Jun 30, 2015.
Name  ? RAB GTPase homolog 1A
  • synonyms:
  • ARABIDOPSIS RAB GTPASE HOMOLOG D2B,
  • ATRABD2B,
  • ATRAB1A,
  • RAB GTPase homolog 1A

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
The Rab-D1 and Rab-D2 subclasses have overlapping functions in the early secretory pathway. [Rab-D2b] 19789181
Findings support a partially redundant role for AtRabD2b and AtRabD2c in vesicle trafficking during pollen tube growth that cannot be fulfilled by the remaining AtRabD family members.[AtRabD2b] 21269510

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G47200 0.5kb upstream 0.5kb upstream 2735   true Chr5: 19166359-19169093
AT5G47200 0.5kb upstream 0.5kb upstream 500   false Chr5: 19166359-19166858
AT5G47200 0.5kb downstream 0.5kb downstream 2735   true Chr5: 19166859-19169593
AT5G47200 0.5kb downstream 0.5kb downstream 500   false Chr5: 19169094-19169593
AT5G47200 1.0kb upstream 1.0kb upstream 3235   true Chr5: 19165859-19169093
AT5G47200 1.0kb upstream 1.0kb upstream 1000   false Chr5: 19165859-19166858
AT5G47200 1.0kb downstream 1.0kb downstream 3235   true Chr5: 19166859-19170093
AT5G47200 1.0kb downstream 1.0kb downstream 1000   false Chr5: 19169094-19170093
AT5G47200 3.0kb upstream 3.0kb upstream 5235   true Chr5: 19163859-19169093
AT5G47200 3.0kb upstream 3.0kb upstream 3000   false Chr5: 19163859-19166858
AT5G47200 3.0kb downstream 3.0kb downstream 5235   true Chr5: 19166859-19172093
AT5G47200 3.0kb downstream 3.0kb downstream 3000   false Chr5: 19169094-19172093

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0 Pathways

Data Source: KEGG

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Expression

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Homology

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139