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Gene : PME5 A. thaliana

Gene ID  ? AT5G47500
Brief Description  Pectin lyase-like superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G19730.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? predicted to encode a pectin methylesterase  Source: TAIR, Jun 30, 2015.
Name  ? pectin methylesterase 5

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G47500 0.5kb upstream 0.5kb upstream 2449   true Chr5: 19270944-19273392
AT5G47500 0.5kb upstream 0.5kb upstream 500   false Chr5: 19272893-19273392
AT5G47500 0.5kb downstream 0.5kb downstream 2449   true Chr5: 19270444-19272892
AT5G47500 0.5kb downstream 0.5kb downstream 500   false Chr5: 19270444-19270943
AT5G47500 1.0kb upstream 1.0kb upstream 2949   true Chr5: 19270944-19273892
AT5G47500 1.0kb upstream 1.0kb upstream 1000   false Chr5: 19272893-19273892
AT5G47500 1.0kb downstream 1.0kb downstream 2949   true Chr5: 19269944-19272892
AT5G47500 1.0kb downstream 1.0kb downstream 1000   false Chr5: 19269944-19270943
AT5G47500 3.0kb upstream 3.0kb upstream 4949   true Chr5: 19270944-19275892
AT5G47500 3.0kb upstream 3.0kb upstream 3000   false Chr5: 19272893-19275892
AT5G47500 3.0kb downstream 3.0kb downstream 4949   true Chr5: 19267944-19272892
AT5G47500 3.0kb downstream 3.0kb downstream 3000   false Chr5: 19267944-19270943

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Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139