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Gene : AT5G49200 A. thaliana

Gene ID  ? AT5G49200
Brief Description  WD-40 repeat family protein / zfwd4 protein (ZFWD4)  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? WD-40 repeat family protein / zfwd4 protein (ZFWD4); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Zinc finger, CCCH-type (InterPro:IPR000571), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / zfwd3 protein (ZFWD3) (TAIR:AT5G40880.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G49200 0.5kb upstream 0.5kb upstream 1987   true Chr5: 19947689-19949675
AT5G49200 0.5kb upstream 0.5kb upstream 500   false Chr5: 19949176-19949675
AT5G49200 0.5kb downstream 0.5kb downstream 1987   true Chr5: 19947189-19949175
AT5G49200 0.5kb downstream 0.5kb downstream 500   false Chr5: 19947189-19947688
AT5G49200 1.0kb upstream 1.0kb upstream 2487   true Chr5: 19947689-19950175
AT5G49200 1.0kb upstream 1.0kb upstream 1000   false Chr5: 19949176-19950175
AT5G49200 1.0kb downstream 1.0kb downstream 2487   true Chr5: 19946689-19949175
AT5G49200 1.0kb downstream 1.0kb downstream 1000   false Chr5: 19946689-19947688
AT5G49200 3.0kb upstream 3.0kb upstream 4487   true Chr5: 19947689-19952175
AT5G49200 3.0kb upstream 3.0kb upstream 3000   false Chr5: 19949176-19952175
AT5G49200 3.0kb downstream 3.0kb downstream 4487   true Chr5: 19944689-19949175
AT5G49200 3.0kb downstream 3.0kb downstream 3000   false Chr5: 19944689-19947688

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Data Source: KEGG

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7 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0