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Gene : APC2 A. thaliana

Gene ID  ? AT5G51050
Brief Description  Mitochondrial substrate carrier family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding, calcium ion binding; INVOLVED IN: transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), Mitochondrial substrate carrier (InterPro:IPR001993), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), Mitochondrial carrier protein (InterPro:IPR002067), EF-HAND 2 (InterPro:IPR018249), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT5G07320.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a mitochondrial ATP-Mg/Pi transporter. Binds to calcium.  Source: TAIR, Jun 30, 2015.
Name  ? ATP/phosphate carrier 2

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G51050 0.5kb upstream 0.5kb upstream 3598   true Chr5: 20752540-20756137
AT5G51050 0.5kb upstream 0.5kb upstream 500   false Chr5: 20752540-20753039
AT5G51050 0.5kb downstream 0.5kb downstream 3598   true Chr5: 20753040-20756637
AT5G51050 0.5kb downstream 0.5kb downstream 500   false Chr5: 20756138-20756637
AT5G51050 1.0kb upstream 1.0kb upstream 4098   true Chr5: 20752040-20756137
AT5G51050 1.0kb upstream 1.0kb upstream 1000   false Chr5: 20752040-20753039
AT5G51050 1.0kb downstream 1.0kb downstream 4098   true Chr5: 20753040-20757137
AT5G51050 1.0kb downstream 1.0kb downstream 1000   false Chr5: 20756138-20757137
AT5G51050 3.0kb upstream 3.0kb upstream 6098   true Chr5: 20750040-20756137
AT5G51050 3.0kb upstream 3.0kb upstream 3000   false Chr5: 20750040-20753039
AT5G51050 3.0kb downstream 3.0kb downstream 6098   true Chr5: 20753040-20759137
AT5G51050 3.0kb downstream 3.0kb downstream 3000   false Chr5: 20756138-20759137

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0 Pathways

Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139