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Gene : AT5G51910 A. thaliana

Gene ID  ? AT5G51910
Brief Description  TCP family transcription factor  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? TCP family transcription factor ; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT2G45680.1).  Source: TAIR, Jun 30, 2015.
  • synonyms:
  • TCP domain protein 19,
  • TCP19

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G51910 0.5kb upstream 0.5kb upstream 1845   true Chr5: 21094547-21096391
AT5G51910 0.5kb upstream 0.5kb upstream 500   false Chr5: 21095892-21096391
AT5G51910 0.5kb downstream 0.5kb downstream 1845   true Chr5: 21094047-21095891
AT5G51910 0.5kb downstream 0.5kb downstream 500   false Chr5: 21094047-21094546
AT5G51910 1.0kb upstream 1.0kb upstream 2345   true Chr5: 21094547-21096891
AT5G51910 1.0kb upstream 1.0kb upstream 1000   false Chr5: 21095892-21096891
AT5G51910 1.0kb downstream 1.0kb downstream 2345   true Chr5: 21093547-21095891
AT5G51910 1.0kb downstream 1.0kb downstream 1000   false Chr5: 21093547-21094546
AT5G51910 3.0kb upstream 3.0kb upstream 4345   true Chr5: 21094547-21098891
AT5G51910 3.0kb upstream 3.0kb upstream 3000   false Chr5: 21095892-21098891
AT5G51910 3.0kb downstream 3.0kb downstream 4345   true Chr5: 21091547-21095891
AT5G51910 3.0kb downstream 3.0kb downstream 3000   false Chr5: 21091547-21094546

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0 Pathways

Data Source: KEGG

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139