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Gene : YSL3 A. thaliana

Gene ID  ? AT5G53550
Brief Description  YELLOW STRIPE like 3  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? YELLOW STRIPE like 3 (YSL3); CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YELLOW STRIPE like 2 (TAIR:AT5G24380.1).  Source: TAIR, Jun 30, 2015.
Name  ? YELLOW STRIPE like 3
  • synonyms:
  • YELLOW STRIPE LIKE 3,
  • ATYSL3

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4 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
YSL1 and YSL3 are involved in the delivery of metal micronutrients to and from vascular tissues. [AtYSL3] 16815956
The effects of mutations at YSL1 and YSL3 on mineral metabolism in A. thaliana throughout the life cycle are reported. 18042200
AtYSL1 and AtYSL3 have dual roles in reproduction. 20625001
This study found that the expression of YSL3 was induced by salicylic acid in an NONEXPRESSOR OF PR1 (NPR1)-dependent pathway and a biological role of YSL3 in the innate immunity of plants was illuminated. 24845074

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G53550 0.5kb upstream 0.5kb upstream 4200   true Chr5: 21754751-21758950
AT5G53550 0.5kb upstream 0.5kb upstream 500   false Chr5: 21754751-21755250
AT5G53550 0.5kb downstream 0.5kb downstream 4200   true Chr5: 21755251-21759450
AT5G53550 0.5kb downstream 0.5kb downstream 500   false Chr5: 21758951-21759450
AT5G53550 1.0kb upstream 1.0kb upstream 4700   true Chr5: 21754251-21758950
AT5G53550 1.0kb upstream 1.0kb upstream 1000   false Chr5: 21754251-21755250
AT5G53550 1.0kb downstream 1.0kb downstream 4700   true Chr5: 21755251-21759950
AT5G53550 1.0kb downstream 1.0kb downstream 1000   false Chr5: 21758951-21759950
AT5G53550 3.0kb upstream 3.0kb upstream 6700   true Chr5: 21752251-21758950
AT5G53550 3.0kb upstream 3.0kb upstream 3000   false Chr5: 21752251-21755250
AT5G53550 3.0kb downstream 3.0kb downstream 6700   true Chr5: 21755251-21761950
AT5G53550 3.0kb downstream 3.0kb downstream 3000   false Chr5: 21758951-21761950

Proteins

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0 Pathways

Data Source: KEGG

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Expression

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Interactions

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Homology

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139