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Gene : YKT61 A. thaliana

Gene ID  ? AT5G58060
Brief Description  SNARE-like superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? YKT61; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: Synaptobrevin family protein (TAIR:AT5G58180.2).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? member of YKT6 Gene Family  Source: TAIR, Jun 30, 2015.

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
YKT61 and YKT62 interact with SYP41 and are essential for membrane fusion mediated by either SYP41 or SYP61 [YKT61] 15919093

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G58060 0.5kb upstream 0.5kb upstream 2746   true Chr5: 23497639-23500384
AT5G58060 0.5kb upstream 0.5kb upstream 500   false Chr5: 23497639-23498138
AT5G58060 0.5kb downstream 0.5kb downstream 2746   true Chr5: 23498139-23500884
AT5G58060 0.5kb downstream 0.5kb downstream 500   false Chr5: 23500385-23500884
AT5G58060 1.0kb upstream 1.0kb upstream 3246   true Chr5: 23497139-23500384
AT5G58060 1.0kb upstream 1.0kb upstream 1000   false Chr5: 23497139-23498138
AT5G58060 1.0kb downstream 1.0kb downstream 3246   true Chr5: 23498139-23501384
AT5G58060 1.0kb downstream 1.0kb downstream 1000   false Chr5: 23500385-23501384
AT5G58060 3.0kb upstream 3.0kb upstream 5246   true Chr5: 23495139-23500384
AT5G58060 3.0kb upstream 3.0kb upstream 3000   false Chr5: 23495139-23498138
AT5G58060 3.0kb downstream 3.0kb downstream 5246   true Chr5: 23498139-23503384
AT5G58060 3.0kb downstream 3.0kb downstream 3000   false Chr5: 23500385-23503384

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
04130 SNARE interactions in vesicular transport

Gene --> Ontology term

Gene --> Pathways


Expression

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Array Expression

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Interactions

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Homology

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Stocks

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Other

11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139