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Gene : AT5G59840 A. thaliana

Gene ID  ? AT5G59840
Brief Description  Ras-related small GTP-binding family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Ras-related small GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 8A (TAIR:AT3G46060.3).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G59840 0.5kb upstream 0.5kb upstream 2810   true Chr5: 24107215-24110024
AT5G59840 0.5kb upstream 0.5kb upstream 500   false Chr5: 24109525-24110024
AT5G59840 0.5kb downstream 0.5kb downstream 2810   true Chr5: 24106715-24109524
AT5G59840 0.5kb downstream 0.5kb downstream 500   false Chr5: 24106715-24107214
AT5G59840 1.0kb upstream 1.0kb upstream 3310   true Chr5: 24107215-24110524
AT5G59840 1.0kb upstream 1.0kb upstream 1000   false Chr5: 24109525-24110524
AT5G59840 1.0kb downstream 1.0kb downstream 3310   true Chr5: 24106215-24109524
AT5G59840 1.0kb downstream 1.0kb downstream 1000   false Chr5: 24106215-24107214
AT5G59840 3.0kb upstream 3.0kb upstream 5310   true Chr5: 24107215-24112524
AT5G59840 3.0kb upstream 3.0kb upstream 3000   false Chr5: 24109525-24112524
AT5G59840 3.0kb downstream 3.0kb downstream 5310   true Chr5: 24104215-24109524
AT5G59840 3.0kb downstream 3.0kb downstream 3000   false Chr5: 24104215-24107214

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
04144 Endocytosis

Gene --> Ontology term

Gene --> Pathways


Expression

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Array Expression

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0