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Gene : AGL42 A. thaliana

Gene ID  ? AT5G62165
Brief Description  AGAMOUS-like 42  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? AGAMOUS-like 42 (AGL42); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 20 (TAIR:AT2G45660.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a MADS box transcription factor. Expressed in quiescent center. Involved in floral transition.  Source: TAIR, Jun 30, 2015.
Name  ? AGAMOUS-like 42
  • synonyms:
  • FYF

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Role for AGL42 in the floral transition in the apical and axillary meristems. 21609362
FYF controls floral senescence/abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA in Arabidopsis. 21689171


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G62165 0.5kb upstream 0.5kb upstream 4462   true Chr5: 24964146-24968607
AT5G62165 0.5kb upstream 0.5kb upstream 500   false Chr5: 24964146-24964645
AT5G62165 0.5kb downstream 0.5kb downstream 4462   true Chr5: 24964646-24969107
AT5G62165 0.5kb downstream 0.5kb downstream 500   false Chr5: 24968608-24969107
AT5G62165 1.0kb upstream 1.0kb upstream 4962   true Chr5: 24963646-24968607
AT5G62165 1.0kb upstream 1.0kb upstream 1000   false Chr5: 24963646-24964645
AT5G62165 1.0kb downstream 1.0kb downstream 4962   true Chr5: 24964646-24969607
AT5G62165 1.0kb downstream 1.0kb downstream 1000   false Chr5: 24968608-24969607
AT5G62165 3.0kb upstream 3.0kb upstream 6962   true Chr5: 24961646-24968607
AT5G62165 3.0kb upstream 3.0kb upstream 3000   false Chr5: 24961646-24964645
AT5G62165 3.0kb downstream 3.0kb downstream 6962   true Chr5: 24964646-24971607
AT5G62165 3.0kb downstream 3.0kb downstream 3000   false Chr5: 24968608-24971607


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0 Pathways

Data Source: KEGG

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139