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Gene : SMC2 A. thaliana

Gene ID  ? AT5G62410
Brief Description  structural maintenance of chromosomes 2  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? structural maintenance of chromosomes 2 (SMC2); FUNCTIONS IN: transporter activity; INVOLVED IN: chromosome organization; LOCATED IN: condensin complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: Structural maintenance of chromosomes (SMC) family protein (TAIR:AT3G47460.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? SMC2-1 (SMC2)  Source: TAIR, Jun 30, 2015.
Name  ? structural maintenance of chromosomes 2
  • synonyms:
  • ATSMC4,
  • TITAN 3,
  • TTN3,
  • ATCAP-E1

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G62410 0.5kb upstream 0.5kb upstream 7146   true Chr5: 25055525-25062670
AT5G62410 0.5kb upstream 0.5kb upstream 500   false Chr5: 25055525-25056024
AT5G62410 0.5kb downstream 0.5kb downstream 7146   true Chr5: 25056025-25063170
AT5G62410 0.5kb downstream 0.5kb downstream 500   false Chr5: 25062671-25063170
AT5G62410 1.0kb upstream 1.0kb upstream 7646   true Chr5: 25055025-25062670
AT5G62410 1.0kb upstream 1.0kb upstream 1000   false Chr5: 25055025-25056024
AT5G62410 1.0kb downstream 1.0kb downstream 7646   true Chr5: 25056025-25063670
AT5G62410 1.0kb downstream 1.0kb downstream 1000   false Chr5: 25062671-25063670
AT5G62410 3.0kb upstream 3.0kb upstream 9646   true Chr5: 25053025-25062670
AT5G62410 3.0kb upstream 3.0kb upstream 3000   false Chr5: 25053025-25056024
AT5G62410 3.0kb downstream 3.0kb downstream 9646   true Chr5: 25056025-25065670
AT5G62410 3.0kb downstream 3.0kb downstream 3000   false Chr5: 25062671-25065670

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Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0