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Gene : CDF1 A. thaliana

Gene ID  ? AT5G62430
Brief Description  cycling DOF factor 1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? cycling DOF factor 1 (CDF1); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: cycling DOF factor 3 (TAIR:AT3G47500.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Dof-type zinc finger domain-containing protein, similar to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Represses expression of Constans (CO), a circadian regulator of flowering time. Interacts with LKP2 and FKF1. Expression oscillates under constant light conditions. Mainly expressed in the vasculature of cotyledons, leaves and hypocotyls, but also in stomata. Localized to the nucleus and acts as a repressor of CONSTANS through binding to the Dof binding sites in the CO promoter. Protein gets degraded by FKF1 in the afternoon.  Source: TAIR, Jun 30, 2015.
Name  ? cycling DOF factor 1

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
findings show that FKF1 controls daily CONSTANS expression in part by degrading CYCLING DOF FACTOR 1 (CDF1), a repressor of CONSTANS transcription [CDF1] 16002617
Detailed expression studies followed by phenotypic assays showed that the CDFs function downstream of GI, influencing responses to freezing temperatures and growth, but are not necessary for proper clock function. 25600594


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G62430 0.5kb upstream 0.5kb upstream 2519   true Chr5: 25069093-25071611
AT5G62430 0.5kb upstream 0.5kb upstream 500   false Chr5: 25071112-25071611
AT5G62430 0.5kb downstream 0.5kb downstream 2519   true Chr5: 25068593-25071111
AT5G62430 0.5kb downstream 0.5kb downstream 500   false Chr5: 25068593-25069092
AT5G62430 1.0kb upstream 1.0kb upstream 3019   true Chr5: 25069093-25072111
AT5G62430 1.0kb upstream 1.0kb upstream 1000   false Chr5: 25071112-25072111
AT5G62430 1.0kb downstream 1.0kb downstream 3019   true Chr5: 25068093-25071111
AT5G62430 1.0kb downstream 1.0kb downstream 1000   false Chr5: 25068093-25069092
AT5G62430 3.0kb upstream 3.0kb upstream 5019   true Chr5: 25069093-25074111
AT5G62430 3.0kb upstream 3.0kb upstream 3000   false Chr5: 25071112-25074111
AT5G62430 3.0kb downstream 3.0kb downstream 5019   true Chr5: 25066093-25071111
AT5G62430 3.0kb downstream 3.0kb downstream 3000   false Chr5: 25066093-25069092


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1 Pathways

Data Source: KEGG

Identifier Name
04712 Circadian rhythm - plant

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12 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139