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Gene : ADK1 A. thaliana

Gene ID  ? AT5G63400
Brief Description  adenylate kinase 1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? adenylate kinase 1 (ADK1); FUNCTIONS IN: copper ion binding, adenylate kinase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenylate kinase, active site lid domain (InterPro:IPR007862), Adenylate kinase, subfamily (InterPro:IPR006259), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: Adenylate kinase family protein (TAIR:AT5G50370.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? encodes a protein similar to adenylate kinase.  Source: TAIR, Jun 30, 2015.
Name  ? adenylate kinase 1

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
a role for ADK and the S-adenosyl-L-methionine pathway in the control of root gravitropism and cap morphogenesis 16891550


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G63400 0.5kb upstream 0.5kb upstream 2488   true Chr5: 25392920-25395407
AT5G63400 0.5kb upstream 0.5kb upstream 500   false Chr5: 25394908-25395407
AT5G63400 0.5kb downstream 0.5kb downstream 2488   true Chr5: 25392420-25394907
AT5G63400 0.5kb downstream 0.5kb downstream 500   false Chr5: 25392420-25392919
AT5G63400 1.0kb upstream 1.0kb upstream 2988   true Chr5: 25392920-25395907
AT5G63400 1.0kb upstream 1.0kb upstream 1000   false Chr5: 25394908-25395907
AT5G63400 1.0kb downstream 1.0kb downstream 2988   true Chr5: 25391920-25394907
AT5G63400 1.0kb downstream 1.0kb downstream 1000   false Chr5: 25391920-25392919
AT5G63400 3.0kb upstream 3.0kb upstream 4988   true Chr5: 25392920-25397907
AT5G63400 3.0kb upstream 3.0kb upstream 3000   false Chr5: 25394908-25397907
AT5G63400 3.0kb downstream 3.0kb downstream 4988   true Chr5: 25389920-25394907
AT5G63400 3.0kb downstream 3.0kb downstream 3000   false Chr5: 25389920-25392919


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3 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
01110 Biosynthesis of secondary metabolites
00230 Purine metabolism

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016