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Gene : MAF3 A. thaliana

Gene ID  ? AT5G65060
Brief Description  K-box region and MADS-box transcription factor family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? MADS AFFECTING FLOWERING 3 (MAF3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: negative regulation of flower development, regulation of transcription, DNA-dependent, vernalization response; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 31 (TAIR:AT5G65050.3).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? MADS domain protein - flowering regulator that is closely related to FLC  Source: TAIR, Jun 30, 2015.
Name  ? MADS AFFECTING FLOWERING 3
  • synonyms:
  • AGAMOUS-like 70,
  • AGL70,
  • FCL3

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Association studies support a correlation between the described MAF2-MAF3 gene rearrangements and flowering time variation in the species 19139056

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G65060 0.5kb upstream 0.5kb upstream 4604   true Chr5: 25986809-25991412
AT5G65060 0.5kb upstream 0.5kb upstream 500   false Chr5: 25986809-25987308
AT5G65060 0.5kb downstream 0.5kb downstream 4604   true Chr5: 25987309-25991912
AT5G65060 0.5kb downstream 0.5kb downstream 500   false Chr5: 25991413-25991912
AT5G65060 1.0kb upstream 1.0kb upstream 5104   true Chr5: 25986309-25991412
AT5G65060 1.0kb upstream 1.0kb upstream 1000   false Chr5: 25986309-25987308
AT5G65060 1.0kb downstream 1.0kb downstream 5104   true Chr5: 25987309-25992412
AT5G65060 1.0kb downstream 1.0kb downstream 1000   false Chr5: 25991413-25992412
AT5G65060 3.0kb upstream 3.0kb upstream 7104   true Chr5: 25984309-25991412
AT5G65060 3.0kb upstream 3.0kb upstream 3000   false Chr5: 25984309-25987308
AT5G65060 3.0kb downstream 3.0kb downstream 7104   true Chr5: 25987309-25994412
AT5G65060 3.0kb downstream 3.0kb downstream 3000   false Chr5: 25991413-25994412

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Function

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0 Pathways

Data Source: KEGG

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Expression

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Array Expression

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Interactions

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Homology

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016