help  | faq  | software  | ARAPORT

Gene : ATAF2 A. thaliana
Gene ID  ? AT5G08790
Brief Description  NAC (No Apical Meristem) domain transcriptional regulator superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? ATAF2; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 102 (TAIR:AT5G63790.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? induced by wounding, belongs to a large family of putative transcriptional activators with NAC domain.  Source: TAIR, Jun 30, 2015.
Paste the following link

Locus History Displayer

Publication Counts Displayer

4 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
ATAF2 overexpressing plants showed a higher susceptibility to the soil-borne fungal pathogen F.oxysporum, and repression of a number of pathogenesis-related proteins. 16115070
The identification of a cis-regulatory binding sequence for ATAF2, is reported. 22937923
ATAF2 regulates NIT2 gene expression via NIT2 promoter binding. 22965747
ATAF2 acts as a central regulator of plant defense, hormone metabolism and light-mediated seedling development 26493403

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G08790 0.5kb upstream 0.5kb upstream 2210   true Chr5: 2858849-2861058
AT5G08790 0.5kb upstream 0.5kb upstream 500   false Chr5: 2860559-2861058
AT5G08790 0.5kb downstream 0.5kb downstream 2210   true Chr5: 2858349-2860558
AT5G08790 0.5kb downstream 0.5kb downstream 500   false Chr5: 2858349-2858848
AT5G08790 1.0kb upstream 1.0kb upstream 2710   true Chr5: 2858849-2861558
AT5G08790 1.0kb upstream 1.0kb upstream 1000   false Chr5: 2860559-2861558
AT5G08790 1.0kb downstream 1.0kb downstream 2710   true Chr5: 2857849-2860558
AT5G08790 1.0kb downstream 1.0kb downstream 1000   false Chr5: 2857849-2858848
AT5G08790 3.0kb upstream 3.0kb upstream 4710   true Chr5: 2858849-2863558
AT5G08790 3.0kb upstream 3.0kb upstream 3000   false Chr5: 2860559-2863558
AT5G08790 3.0kb downstream 3.0kb downstream 4710   true Chr5: 2855849-2860558
AT5G08790 3.0kb downstream 3.0kb downstream 3000   false Chr5: 2855849-2858848

Proteins

Protein Displayer


Function

Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139
Lists
This Gene isn't in any lists. Upload a list.





The Arabidopsis Information Portal is funded by a grant from the National Science Foundation (#DBI-1262414)
and co-funded by a grant from the Biotechnology and Biological Sciences Research Council (BB/L027151/1)