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Gene : ATAF2 A. thaliana

Gene ID  ? AT5G08790
Brief Description  NAC (No Apical Meristem) domain transcriptional regulator superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? ATAF2; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 102 (TAIR:AT5G63790.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? induced by wounding, belongs to a large family of putative transcriptional activators with NAC domain.  Source: TAIR, Jun 30, 2015.

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4 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
ATAF2 overexpressing plants showed a higher susceptibility to the soil-borne fungal pathogen F.oxysporum, and repression of a number of pathogenesis-related proteins. 16115070
The identification of a cis-regulatory binding sequence for ATAF2, is reported. 22937923
ATAF2 regulates NIT2 gene expression via NIT2 promoter binding. 22965747
ATAF2 acts as a central regulator of plant defense, hormone metabolism and light-mediated seedling development 26493403

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G08790 0.5kb upstream 0.5kb upstream 2210   true Chr5: 2858849-2861058
AT5G08790 0.5kb upstream 0.5kb upstream 500   false Chr5: 2860559-2861058
AT5G08790 0.5kb downstream 0.5kb downstream 2210   true Chr5: 2858349-2860558
AT5G08790 0.5kb downstream 0.5kb downstream 500   false Chr5: 2858349-2858848
AT5G08790 1.0kb upstream 1.0kb upstream 2710   true Chr5: 2858849-2861558
AT5G08790 1.0kb upstream 1.0kb upstream 1000   false Chr5: 2860559-2861558
AT5G08790 1.0kb downstream 1.0kb downstream 2710   true Chr5: 2857849-2860558
AT5G08790 1.0kb downstream 1.0kb downstream 1000   false Chr5: 2857849-2858848
AT5G08790 3.0kb upstream 3.0kb upstream 4710   true Chr5: 2858849-2863558
AT5G08790 3.0kb upstream 3.0kb upstream 3000   false Chr5: 2860559-2863558
AT5G08790 3.0kb downstream 3.0kb downstream 4710   true Chr5: 2855849-2860558
AT5G08790 3.0kb downstream 3.0kb downstream 3000   false Chr5: 2855849-2858848

Proteins

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0 Pathways

Data Source: KEGG

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Expression

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Array Expression

RNA-seq Expression

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Interactions

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Homology

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139