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Gene : FUS5 A. thaliana

Gene ID  ? AT1G02090
Brief Description  Proteasome component (PCI) domain protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? FUSCA 5 (FUS5); CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? encodes a phosphoprotein that is a subunit of the COP9 signalosome. Mutants exhibit constitutive photomorphogenic phenotype.  Source: TAIR, Jun 30, 2015.
Name  ? FUSCA 5
  • synonyms:
  • ATCSN7,
  • CSN7,
  • COP15,

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
CSN7 contains a PCI motif and is involved in COP9 signalosome assembly. 18854373
CSN is a negative regulator of RNR activity in Arabidopsis. 21614643


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G02090 0.5kb upstream 0.5kb upstream 3032   true Chr1: 387277-390308
AT1G02090 0.5kb upstream 0.5kb upstream 500   false Chr1: 389809-390308
AT1G02090 0.5kb downstream 0.5kb downstream 3032   true Chr1: 386777-389808
AT1G02090 0.5kb downstream 0.5kb downstream 500   false Chr1: 386777-387276
AT1G02090 1.0kb upstream 1.0kb upstream 3532   true Chr1: 387277-390808
AT1G02090 1.0kb upstream 1.0kb upstream 1000   false Chr1: 389809-390808
AT1G02090 1.0kb downstream 1.0kb downstream 3532   true Chr1: 386277-389808
AT1G02090 1.0kb downstream 1.0kb downstream 1000   false Chr1: 386277-387276
AT1G02090 3.0kb upstream 3.0kb upstream 5532   true Chr1: 387277-392808
AT1G02090 3.0kb upstream 3.0kb upstream 3000   false Chr1: 389809-392808
AT1G02090 3.0kb downstream 3.0kb downstream 5532   true Chr1: 384277-389808
AT1G02090 3.0kb downstream 3.0kb downstream 3000   false Chr1: 384277-387276


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0 Pathways

Data Source: KEGG

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139