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Gene : AT1G03890 A. thaliana

Gene ID  ? AT1G03890
Brief Description  RmlC-like cupins superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? RmlC-like cupins superfamily protein; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf, seed; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S seed storage protein, plant (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G44120.3).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G03890 0.5kb upstream 0.5kb upstream 2323   true Chr1: 988698-991020
AT1G03890 0.5kb upstream 0.5kb upstream 500   false Chr1: 988698-989197
AT1G03890 0.5kb downstream 0.5kb downstream 2323   true Chr1: 989198-991520
AT1G03890 0.5kb downstream 0.5kb downstream 500   false Chr1: 991021-991520
AT1G03890 1.0kb upstream 1.0kb upstream 2823   true Chr1: 988198-991020
AT1G03890 1.0kb upstream 1.0kb upstream 1000   false Chr1: 988198-989197
AT1G03890 1.0kb downstream 1.0kb downstream 2823   true Chr1: 989198-992020
AT1G03890 1.0kb downstream 1.0kb downstream 1000   false Chr1: 991021-992020
AT1G03890 3.0kb upstream 3.0kb upstream 4823   true Chr1: 986198-991020
AT1G03890 3.0kb upstream 3.0kb upstream 3000   false Chr1: 986198-989197
AT1G03890 3.0kb downstream 3.0kb downstream 4823   true Chr1: 989198-994020
AT1G03890 3.0kb downstream 3.0kb downstream 3000   false Chr1: 991021-994020

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Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0