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Gene : PERK11 A. thaliana

Gene ID  ? AT1G10620
Brief Description  Protein kinase superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: sepal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G23540.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family. This family consists of 15 predicted receptor kinases (PMID: 15653807).  Source: TAIR, Jun 30, 2015.
Name  ? proline-rich extensin-like receptor kinase 11
  • synonyms:
  • AtPERK11,
  • proline-rich extensin-like receptor kinase 11

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G10620 0.5kb upstream 0.5kb upstream 3821   true Chr1: 3509001-3512821
AT1G10620 0.5kb upstream 0.5kb upstream 500   false Chr1: 3512322-3512821
AT1G10620 0.5kb downstream 0.5kb downstream 3821   true Chr1: 3508501-3512321
AT1G10620 0.5kb downstream 0.5kb downstream 500   false Chr1: 3508501-3509000
AT1G10620 1.0kb upstream 1.0kb upstream 4321   true Chr1: 3509001-3513321
AT1G10620 1.0kb upstream 1.0kb upstream 1000   false Chr1: 3512322-3513321
AT1G10620 1.0kb downstream 1.0kb downstream 4321   true Chr1: 3508001-3512321
AT1G10620 1.0kb downstream 1.0kb downstream 1000   false Chr1: 3508001-3509000
AT1G10620 3.0kb upstream 3.0kb upstream 6321   true Chr1: 3509001-3515321
AT1G10620 3.0kb upstream 3.0kb upstream 3000   false Chr1: 3512322-3515321
AT1G10620 3.0kb downstream 3.0kb downstream 6321   true Chr1: 3506001-3512321
AT1G10620 3.0kb downstream 3.0kb downstream 3000   false Chr1: 3506001-3509000

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Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0