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Gene : ELF5A-1 A. thaliana

Gene ID  ? AT1G13950
Brief Description  eukaryotic elongation factor 5A-1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? eukaryotic elongation factor 5A-1 (ELF5A-1); FUNCTIONS IN: ribosome binding, RNA binding, translation elongation factor activity, translation initiation factor activity; INVOLVED IN: translational initiation, xylem development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation elongation factor, IF5A, hypusine site (InterPro:IPR019769), Translation protein SH3-like, subgroup (InterPro:IPR014722), Translation elongation factor, IF5A (InterPro:IPR001884), Translation elongation factor, IF5A C-terminal (InterPro:IPR020189), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: eukaryotic elongation factor 5A-3 (TAIR:AT1G69410.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced.  Source: TAIR, Jun 30, 2015.
Name  ? eukaryotic elongation factor 5A-1
  • synonyms:
  • ATELF5A-1,
  • EUKARYOTIC ELONGATION FACTOR 5A-1,
  • EIF5A,
  • EIF-5A,
  • EUKARYOTIC ELONGATION FACTOR 5A

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
A study evaluating the role of eIF5A1 in xylem formation is presented. 18304977

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G13950 0.5kb upstream 0.5kb upstream 2002   true Chr1: 4772934-4774935
AT1G13950 0.5kb upstream 0.5kb upstream 500   false Chr1: 4772934-4773433
AT1G13950 0.5kb downstream 0.5kb downstream 2002   true Chr1: 4773434-4775435
AT1G13950 0.5kb downstream 0.5kb downstream 500   false Chr1: 4774936-4775435
AT1G13950 1.0kb upstream 1.0kb upstream 2502   true Chr1: 4772434-4774935
AT1G13950 1.0kb upstream 1.0kb upstream 1000   false Chr1: 4772434-4773433
AT1G13950 1.0kb downstream 1.0kb downstream 2502   true Chr1: 4773434-4775935
AT1G13950 1.0kb downstream 1.0kb downstream 1000   false Chr1: 4774936-4775935
AT1G13950 3.0kb upstream 3.0kb upstream 4502   true Chr1: 4770434-4774935
AT1G13950 3.0kb upstream 3.0kb upstream 3000   false Chr1: 4770434-4773433
AT1G13950 3.0kb downstream 3.0kb downstream 4502   true Chr1: 4773434-4777935
AT1G13950 3.0kb downstream 3.0kb downstream 3000   false Chr1: 4774936-4777935

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0 Pathways

Data Source: KEGG

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139