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Gene : AT1G19230 A. thaliana

Gene ID  ? AT1G19230
Brief Description  Riboflavin synthase-like superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Riboflavin synthase-like superfamily protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: defense response; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-hand-like domain (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), Ferric reductase, NAD binding (InterPro:IPR013121), NADPH oxidase Respiratory burst (InterPro:IPR013623), FAD-binding 8 (InterPro:IPR013112), EF-HAND 2 (InterPro:IPR018249), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: respiratory burst oxidase protein F (TAIR:AT1G64060.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G19230 0.5kb upstream 0.5kb upstream 5934   true Chr1: 6643442-6649375
AT1G19230 0.5kb upstream 0.5kb upstream 500   false Chr1: 6643442-6643941
AT1G19230 0.5kb downstream 0.5kb downstream 5934   true Chr1: 6643942-6649875
AT1G19230 0.5kb downstream 0.5kb downstream 500   false Chr1: 6649376-6649875
AT1G19230 1.0kb upstream 1.0kb upstream 6434   true Chr1: 6642942-6649375
AT1G19230 1.0kb upstream 1.0kb upstream 1000   false Chr1: 6642942-6643941
AT1G19230 1.0kb downstream 1.0kb downstream 6434   true Chr1: 6643942-6650375
AT1G19230 1.0kb downstream 1.0kb downstream 1000   false Chr1: 6649376-6650375
AT1G19230 3.0kb upstream 3.0kb upstream 8434   true Chr1: 6640942-6649375
AT1G19230 3.0kb upstream 3.0kb upstream 3000   false Chr1: 6640942-6643941
AT1G19230 3.0kb downstream 3.0kb downstream 8434   true Chr1: 6643942-6652375
AT1G19230 3.0kb downstream 3.0kb downstream 3000   false Chr1: 6649376-6652375

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1 Pathways

Data Source: KEGG

Identifier Name
04626 Plant-pathogen interaction

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0