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Gene : THO2 A. thaliana

Gene ID  ? AT1G24706
Brief Description  THO2  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? THO2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: THO complex, subunitTHOC2, C-region (InterPro:IPR021418), THO complex, subunitTHOC2, N-region (InterPro:IPR021726).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G24706 0.5kb upstream 0.5kb upstream 14269   true Chr1: 8741336-8755604
AT1G24706 0.5kb upstream 0.5kb upstream 500   false Chr1: 8741336-8741835
AT1G24706 0.5kb downstream 0.5kb downstream 14269   true Chr1: 8741836-8756104
AT1G24706 0.5kb downstream 0.5kb downstream 500   false Chr1: 8755605-8756104
AT1G24706 1.0kb upstream 1.0kb upstream 14769   true Chr1: 8740836-8755604
AT1G24706 1.0kb upstream 1.0kb upstream 1000   false Chr1: 8740836-8741835
AT1G24706 1.0kb downstream 1.0kb downstream 14769   true Chr1: 8741836-8756604
AT1G24706 1.0kb downstream 1.0kb downstream 1000   false Chr1: 8755605-8756604
AT1G24706 3.0kb upstream 3.0kb upstream 16769   true Chr1: 8738836-8755604
AT1G24706 3.0kb upstream 3.0kb upstream 3000   false Chr1: 8738836-8741835
AT1G24706 3.0kb downstream 3.0kb downstream 16769   true Chr1: 8741836-8758604
AT1G24706 3.0kb downstream 3.0kb downstream 3000   false Chr1: 8755605-8758604

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2 Pathways

Data Source: KEGG

Identifier Name
03040 Spliceosome
03013 RNA transport

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139