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Gene : CES A. thaliana

Gene ID  ? AT1G25330
Brief Description  basic helix-loop-helix (bHLH) DNA-binding superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BR enhanced expression 1 (TAIR:AT1G18400.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes CESTA, a positive regulator of brassinosteroid biosynthesis.  Source: TAIR, Jun 30, 2015.
Name  ? CESTA
  • synonyms:
  • HAF,
  • HALF FILLED

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
HALF FILLED (HAF) gene, a bHLH-encoding transcription factor, is required for reproductive tract development. HAF acts redundantly with two closely related genes, BRASSINOSTEROID ENHANCED EXPRESSION1 (BEE1) and BEE3. [HALF FILLED] [HAF] 21693516

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G25330 0.5kb upstream 0.5kb upstream 2334   true Chr1: 8880267-8882600
AT1G25330 0.5kb upstream 0.5kb upstream 500   false Chr1: 8882101-8882600
AT1G25330 0.5kb downstream 0.5kb downstream 2334   true Chr1: 8879767-8882100
AT1G25330 0.5kb downstream 0.5kb downstream 500   false Chr1: 8879767-8880266
AT1G25330 1.0kb upstream 1.0kb upstream 2834   true Chr1: 8880267-8883100
AT1G25330 1.0kb upstream 1.0kb upstream 1000   false Chr1: 8882101-8883100
AT1G25330 1.0kb downstream 1.0kb downstream 2834   true Chr1: 8879267-8882100
AT1G25330 1.0kb downstream 1.0kb downstream 1000   false Chr1: 8879267-8880266
AT1G25330 3.0kb upstream 3.0kb upstream 4834   true Chr1: 8880267-8885100
AT1G25330 3.0kb upstream 3.0kb upstream 3000   false Chr1: 8882101-8885100
AT1G25330 3.0kb downstream 3.0kb downstream 4834   true Chr1: 8877267-8882100
AT1G25330 3.0kb downstream 3.0kb downstream 3000   false Chr1: 8877267-8880266

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0 Pathways

Data Source: KEGG

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Expression

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Interactions

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Homology

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139