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Gene : AT1G66530 A. thaliana

Gene ID  ? AT1G66530
Brief Description  Arginyl-tRNA synthetase, class Ic  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Arginyl-tRNA synthetase, class Ic; FUNCTIONS IN: aminoacyl-tRNA ligase activity, nucleotide binding, arginine-tRNA ligase activity, ATP binding; INVOLVED IN: arginyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), DALR anticodon binding (InterPro:IPR008909), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Arginyl-tRNA synthetase, class Ic, core (InterPro:IPR015945), Arginyl tRNA synthetase, class Ic, N-terminal (InterPro:IPR005148), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Arginyl-tRNA synthetase, class Ic (InterPro:IPR001278); BEST Arabidopsis thaliana protein match is: Arginyl-tRNA synthetase, class Ic (TAIR:AT4G26300.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G66530 0.5kb upstream 0.5kb upstream 4000   true Chr1: 24818911-24822910
AT1G66530 0.5kb upstream 0.5kb upstream 500   false Chr1: 24822411-24822910
AT1G66530 0.5kb downstream 0.5kb downstream 4000   true Chr1: 24818411-24822410
AT1G66530 0.5kb downstream 0.5kb downstream 500   false Chr1: 24818411-24818910
AT1G66530 1.0kb upstream 1.0kb upstream 4500   true Chr1: 24818911-24823410
AT1G66530 1.0kb upstream 1.0kb upstream 1000   false Chr1: 24822411-24823410
AT1G66530 1.0kb downstream 1.0kb downstream 4500   true Chr1: 24817911-24822410
AT1G66530 1.0kb downstream 1.0kb downstream 1000   false Chr1: 24817911-24818910
AT1G66530 3.0kb upstream 3.0kb upstream 6500   true Chr1: 24818911-24825410
AT1G66530 3.0kb upstream 3.0kb upstream 3000   false Chr1: 24822411-24825410
AT1G66530 3.0kb downstream 3.0kb downstream 6500   true Chr1: 24815911-24822410
AT1G66530 3.0kb downstream 3.0kb downstream 3000   false Chr1: 24815911-24818910

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1 Pathways

Data Source: KEGG

Identifier Name
00970 Aminoacyl-tRNA biosynthesis

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Expression

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0