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Gene : ELF5A-3 A. thaliana

Gene ID  ? AT1G69410
Brief Description  eukaryotic elongation factor 5A-3  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? eukaryotic elongation factor 5A-3 (ELF5A-3); FUNCTIONS IN: ribosome binding, RNA binding, translation elongation factor activity, translation initiation factor activity; INVOLVED IN: translational initiation, translational frameshifting, positive regulation of translational termination, peptidyl-lysine modification to hypusine, positive regulation of translational elongation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation elongation factor, IF5A, hypusine site (InterPro:IPR019769), Translation protein SH3-like, subgroup (InterPro:IPR014722), Translation elongation factor, IF5A (InterPro:IPR001884), Translation elongation factor, IF5A C-terminal (InterPro:IPR020189), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: eukaryotic elongation factor 5A-1 (TAIR:AT1G13950.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes eIF5A-2, a putative eukaryotic translation initiation factor. There are three eIF5A coding genes in Arabidopsis: eIF5A-1/At1g13950, eIF5A-2/At1g26630 and eIF5A-3/At1g69410.  Source: TAIR, Jun 30, 2015.
Name  ? eukaryotic elongation factor 5A-3
  • synonyms:
  • EUKARYOTIC ELONGATION FACTOR 5A-3,
  • ATELF5A-3

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
AteIF5A3 appears to be involved in supporting growth and to play a regulatory role in the response of plants to sub-lethal osmotic and nutrient stress. 20492553

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G69410 0.5kb upstream 0.5kb upstream 2205   true Chr1: 26088530-26090734
AT1G69410 0.5kb upstream 0.5kb upstream 500   false Chr1: 26088530-26089029
AT1G69410 0.5kb downstream 0.5kb downstream 2205   true Chr1: 26089030-26091234
AT1G69410 0.5kb downstream 0.5kb downstream 500   false Chr1: 26090735-26091234
AT1G69410 1.0kb upstream 1.0kb upstream 2705   true Chr1: 26088030-26090734
AT1G69410 1.0kb upstream 1.0kb upstream 1000   false Chr1: 26088030-26089029
AT1G69410 1.0kb downstream 1.0kb downstream 2705   true Chr1: 26089030-26091734
AT1G69410 1.0kb downstream 1.0kb downstream 1000   false Chr1: 26090735-26091734
AT1G69410 3.0kb upstream 3.0kb upstream 4705   true Chr1: 26086030-26090734
AT1G69410 3.0kb upstream 3.0kb upstream 3000   false Chr1: 26086030-26089029
AT1G69410 3.0kb downstream 3.0kb downstream 4705   true Chr1: 26089030-26093734
AT1G69410 3.0kb downstream 3.0kb downstream 3000   false Chr1: 26090735-26093734

Proteins

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0 Pathways

Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016