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Gene : emb1473 A. thaliana

Gene ID  ? AT1G78630
Brief Description  Ribosomal protein L13 family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? embryo defective 1473 (emb1473); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: thylakoid, ribosome, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13, bacterial-type (InterPro:IPR005823), Ribosomal protein L13 (InterPro:IPR005822); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT3G01790.2).  Source: TAIR, Jun 30, 2015.
Name  ? embryo defective 1473

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G78630 0.5kb upstream 0.5kb upstream 2575   true Chr1: 29575306-29577880
AT1G78630 0.5kb upstream 0.5kb upstream 500   false Chr1: 29575306-29575805
AT1G78630 0.5kb downstream 0.5kb downstream 2575   true Chr1: 29575806-29578380
AT1G78630 0.5kb downstream 0.5kb downstream 500   false Chr1: 29577881-29578380
AT1G78630 1.0kb upstream 1.0kb upstream 3075   true Chr1: 29574806-29577880
AT1G78630 1.0kb upstream 1.0kb upstream 1000   false Chr1: 29574806-29575805
AT1G78630 1.0kb downstream 1.0kb downstream 3075   true Chr1: 29575806-29578880
AT1G78630 1.0kb downstream 1.0kb downstream 1000   false Chr1: 29577881-29578880
AT1G78630 3.0kb upstream 3.0kb upstream 5075   true Chr1: 29572806-29577880
AT1G78630 3.0kb upstream 3.0kb upstream 3000   false Chr1: 29572806-29575805
AT1G78630 3.0kb downstream 3.0kb downstream 5075   true Chr1: 29575806-29580880
AT1G78630 3.0kb downstream 3.0kb downstream 3000   false Chr1: 29577881-29580880

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
03010 Ribosome

Gene --> Ontology term

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Expression

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139