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Gene : RGLG4 A. thaliana

Gene ID  ? AT1G79380
Brief Description  Ca(2)-dependent phospholipid-binding protein (Copine) family  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Ca(2)-dependent phospholipid-binding protein (Copine) family; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RING domain ligase2 (TAIR:AT5G14420.2).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a ubiquitin ligase that is an essential upstream modulator of JA signaling in response to various stimuli.  Source: TAIR, Jun 30, 2015.
Name  ? RING DOMAIN LIGASE 4

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
RGLG3 and RGLG4 are essential upstream modulators of jasmonate signaling in response to various stimuli. 22898498
RGLG3 and RGLG4 have coordinated and positive roles in mycotoxin fumonisin B1 (FB1)-elicited programmed cell death. [RGLG4] 25788731

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G79380 0.5kb upstream 0.5kb upstream 3326   true Chr1: 29859991-29863316
AT1G79380 0.5kb upstream 0.5kb upstream 500   false Chr1: 29859991-29860490
AT1G79380 0.5kb downstream 0.5kb downstream 3326   true Chr1: 29860491-29863816
AT1G79380 0.5kb downstream 0.5kb downstream 500   false Chr1: 29863317-29863816
AT1G79380 1.0kb upstream 1.0kb upstream 3826   true Chr1: 29859491-29863316
AT1G79380 1.0kb upstream 1.0kb upstream 1000   false Chr1: 29859491-29860490
AT1G79380 1.0kb downstream 1.0kb downstream 3826   true Chr1: 29860491-29864316
AT1G79380 1.0kb downstream 1.0kb downstream 1000   false Chr1: 29863317-29864316
AT1G79380 3.0kb upstream 3.0kb upstream 5826   true Chr1: 29857491-29863316
AT1G79380 3.0kb upstream 3.0kb upstream 3000   false Chr1: 29857491-29860490
AT1G79380 3.0kb downstream 3.0kb downstream 5826   true Chr1: 29860491-29866316
AT1G79380 3.0kb downstream 3.0kb downstream 3000   false Chr1: 29863317-29866316

Proteins

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0 Pathways

Data Source: KEGG

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Expression

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Interactions

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016