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Gene : CPSF73-II A. thaliana

Gene ID  ? AT2G01730
Brief Description  cleavage and polyadenylation specificity factor 73 kDa subunit-II  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? cleavage and polyadenylation specificity factor 73 kDa subunit-II (CPSF73-II); CONTAINS InterPro DOMAIN/s: RNA-metabolising metallo-beta-lactamase (InterPro:IPR011108), Beta-Casp domain (InterPro:IPR022712), Beta-lactamase-like (InterPro:IPR001279); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 73-I (TAIR:AT1G61010.3).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? a homolog of cleavage and polyadenylation specificity factor that plays an essential role in the development of female gametophyte and embryo  Source: TAIR, Jun 30, 2015.
Name  ? cleavage and polyadenylation specificity factor 73 kDa subunit-II
  • synonyms:
  • cleavage and polyadenylation specificity factor 73 kDa subunit-II,
  • ATCPSF73-II,
  • embryo sac development arrest 26,
  • EDA26

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Two 73 kD subunits of the AtCPSF complex appear to have special functions during flower development. 16897494

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G01730 0.5kb upstream 0.5kb upstream 4031   true Chr2: 319933-323963
AT2G01730 0.5kb upstream 0.5kb upstream 500   false Chr2: 319933-320432
AT2G01730 0.5kb downstream 0.5kb downstream 4031   true Chr2: 320433-324463
AT2G01730 0.5kb downstream 0.5kb downstream 500   false Chr2: 323964-324463
AT2G01730 1.0kb upstream 1.0kb upstream 4531   true Chr2: 319433-323963
AT2G01730 1.0kb upstream 1.0kb upstream 1000   false Chr2: 319433-320432
AT2G01730 1.0kb downstream 1.0kb downstream 4531   true Chr2: 320433-324963
AT2G01730 1.0kb downstream 1.0kb downstream 1000   false Chr2: 323964-324963
AT2G01730 3.0kb upstream 3.0kb upstream 6531   true Chr2: 317433-323963
AT2G01730 3.0kb upstream 3.0kb upstream 3000   false Chr2: 317433-320432
AT2G01730 3.0kb downstream 3.0kb downstream 6531   true Chr2: 320433-326963
AT2G01730 3.0kb downstream 3.0kb downstream 3000   false Chr2: 323964-326963

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0 Pathways

Data Source: KEGG

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139