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Gene : RIE1 A. thaliana

Gene ID  ? AT2G01735
Brief Description  RING-finger protein for embryogenesi  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? RING-finger protein for embryogenesis (RIE1); FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G68070.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? encodes a RING-H2 zinc finger protein essential for seed development.  Source: TAIR, Jun 30, 2015.
Name  ? RING-finger protein for embryogenesis

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G01735 0.5kb upstream 0.5kb upstream 2230   true Chr2: 323865-326094
AT2G01735 0.5kb upstream 0.5kb upstream 500   false Chr2: 323865-324364
AT2G01735 0.5kb downstream 0.5kb downstream 2230   true Chr2: 324365-326594
AT2G01735 0.5kb downstream 0.5kb downstream 500   false Chr2: 326095-326594
AT2G01735 1.0kb upstream 1.0kb upstream 2730   true Chr2: 323365-326094
AT2G01735 1.0kb upstream 1.0kb upstream 1000   false Chr2: 323365-324364
AT2G01735 1.0kb downstream 1.0kb downstream 2730   true Chr2: 324365-327094
AT2G01735 1.0kb downstream 1.0kb downstream 1000   false Chr2: 326095-327094
AT2G01735 3.0kb upstream 3.0kb upstream 4730   true Chr2: 321365-326094
AT2G01735 3.0kb upstream 3.0kb upstream 3000   false Chr2: 321365-324364
AT2G01735 3.0kb downstream 3.0kb downstream 4730   true Chr2: 324365-329094
AT2G01735 3.0kb downstream 3.0kb downstream 3000   false Chr2: 326095-329094

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0