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Gene : AT2G26440 A. thaliana

Gene ID  ? AT2G26440
Brief Description  Plant invertase/pectin methylesterase inhibitor superfamily  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT4G02330.1).  Source: TAIR, Jun 30, 2015.
  • synonyms:
  • pectin methylesterase 12,
  • PME12

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G26440 0.5kb upstream 0.5kb upstream 2961   true Chr2: 11246660-11249620
AT2G26440 0.5kb upstream 0.5kb upstream 500   false Chr2: 11246660-11247159
AT2G26440 0.5kb downstream 0.5kb downstream 2961   true Chr2: 11247160-11250120
AT2G26440 0.5kb downstream 0.5kb downstream 500   false Chr2: 11249621-11250120
AT2G26440 1.0kb upstream 1.0kb upstream 3461   true Chr2: 11246160-11249620
AT2G26440 1.0kb upstream 1.0kb upstream 1000   false Chr2: 11246160-11247159
AT2G26440 1.0kb downstream 1.0kb downstream 3461   true Chr2: 11247160-11250620
AT2G26440 1.0kb downstream 1.0kb downstream 1000   false Chr2: 11249621-11250620
AT2G26440 3.0kb upstream 3.0kb upstream 5461   true Chr2: 11244160-11249620
AT2G26440 3.0kb upstream 3.0kb upstream 3000   false Chr2: 11244160-11247159
AT2G26440 3.0kb downstream 3.0kb downstream 5461   true Chr2: 11247160-11252620
AT2G26440 3.0kb downstream 3.0kb downstream 3000   false Chr2: 11249621-11252620

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0