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Gene : NTL8 A. thaliana

Gene ID  ? AT2G27300
Brief Description  NTM1-like 8  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? NTM1-like 8 (NTL8); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 60 (TAIR:AT3G44290.1).  Source: TAIR, Jun 30, 2015.
Name  ? NTM1-like 8
  • synonyms:
  • Arabidopsis NAC domain containing protein 40,
  • ANAC040

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
NTL8 mediates salt-responsive flowering via FT in Arabidopsis.[NTL8] 17410378
modulates gibberellic acid-mediated salt signaling in regulating seed germination 18363782

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G27300 0.5kb upstream 0.5kb upstream 2196   true Chr2: 11680276-11682471
AT2G27300 0.5kb upstream 0.5kb upstream 500   false Chr2: 11681972-11682471
AT2G27300 0.5kb downstream 0.5kb downstream 2196   true Chr2: 11679776-11681971
AT2G27300 0.5kb downstream 0.5kb downstream 500   false Chr2: 11679776-11680275
AT2G27300 1.0kb upstream 1.0kb upstream 2696   true Chr2: 11680276-11682971
AT2G27300 1.0kb upstream 1.0kb upstream 1000   false Chr2: 11681972-11682971
AT2G27300 1.0kb downstream 1.0kb downstream 2696   true Chr2: 11679276-11681971
AT2G27300 1.0kb downstream 1.0kb downstream 1000   false Chr2: 11679276-11680275
AT2G27300 3.0kb upstream 3.0kb upstream 4696   true Chr2: 11680276-11684971
AT2G27300 3.0kb upstream 3.0kb upstream 3000   false Chr2: 11681972-11684971
AT2G27300 3.0kb downstream 3.0kb downstream 4696   true Chr2: 11677276-11681971
AT2G27300 3.0kb downstream 3.0kb downstream 3000   false Chr2: 11677276-11680275

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0 Pathways

Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016