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Gene : ATP3 A. thaliana

Gene ID  ? AT2G33040
Brief Description  gamma subunit of Mt ATP synthase  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? gamma subunit of Mt ATP synthase (ATP3); FUNCTIONS IN: zinc ion binding; INVOLVED IN: proton transport, ATP synthesis coupled proton transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, gamma subunit (InterPro:IPR000131); BEST Arabidopsis thaliana protein match is: ATPase, F1 complex, gamma subunit protein (TAIR:AT1G15700.1).  Source: TAIR, Jun 30, 2015.
Name  ? gamma subunit of Mt ATP synthase

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Phenotypic effects of antisense expression were identical for atp5 and atp3. Reduced expression of either gene resulted in stunting of etiolated seedlings, downward curling or wavy-edged leaf margins and ball-shaped unexpanded flowers. 19748911

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G33040 0.5kb upstream 0.5kb upstream 3076   true Chr2: 14018610-14021685
AT2G33040 0.5kb upstream 0.5kb upstream 500   false Chr2: 14021186-14021685
AT2G33040 0.5kb downstream 0.5kb downstream 3076   true Chr2: 14018110-14021185
AT2G33040 0.5kb downstream 0.5kb downstream 500   false Chr2: 14018110-14018609
AT2G33040 1.0kb upstream 1.0kb upstream 3576   true Chr2: 14018610-14022185
AT2G33040 1.0kb upstream 1.0kb upstream 1000   false Chr2: 14021186-14022185
AT2G33040 1.0kb downstream 1.0kb downstream 3576   true Chr2: 14017610-14021185
AT2G33040 1.0kb downstream 1.0kb downstream 1000   false Chr2: 14017610-14018609
AT2G33040 3.0kb upstream 3.0kb upstream 5576   true Chr2: 14018610-14024185
AT2G33040 3.0kb upstream 3.0kb upstream 3000   false Chr2: 14021186-14024185
AT2G33040 3.0kb downstream 3.0kb downstream 5576   true Chr2: 14015610-14021185
AT2G33040 3.0kb downstream 3.0kb downstream 3000   false Chr2: 14015610-14018609

Proteins

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Function

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2 Pathways

Data Source: KEGG

Identifier Name
00190 Oxidative phosphorylation
01100 Metabolic pathways

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Expression

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Interactions

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Homology

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Stocks

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12 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139