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Gene : FIS2 A. thaliana

Gene ID  ? AT2G35670
Brief Description  VEFS-Box of polycomb protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? FERTILIZATION INDEPENDENT SEED 2 (FIS2); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Polycomb protein, VEFS-Box (InterPro:IPR019135); BEST Arabidopsis thaliana protein match is: VEFS-Box of polycomb protein (TAIR:AT4G16845.2).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a negative regulator of seed development in the absence of pollination. In the ovule, the FIS2 transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization.  Source: TAIR, Jun 30, 2015.
Name  ? FERTILIZATION INDEPENDENT SEED 2
  • synonyms:
  • FERTILIZATION-INDEPENDENT ENDOSPERM 2,
  • FIE2

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G35670 0.5kb upstream 0.5kb upstream 4692   true Chr2: 14992065-14996756
AT2G35670 0.5kb upstream 0.5kb upstream 500   false Chr2: 14992065-14992564
AT2G35670 0.5kb downstream 0.5kb downstream 4692   true Chr2: 14992565-14997256
AT2G35670 0.5kb downstream 0.5kb downstream 500   false Chr2: 14996757-14997256
AT2G35670 1.0kb upstream 1.0kb upstream 5192   true Chr2: 14991565-14996756
AT2G35670 1.0kb upstream 1.0kb upstream 1000   false Chr2: 14991565-14992564
AT2G35670 1.0kb downstream 1.0kb downstream 5192   true Chr2: 14992565-14997756
AT2G35670 1.0kb downstream 1.0kb downstream 1000   false Chr2: 14996757-14997756
AT2G35670 3.0kb upstream 3.0kb upstream 7192   true Chr2: 14989565-14996756
AT2G35670 3.0kb upstream 3.0kb upstream 3000   false Chr2: 14989565-14992564
AT2G35670 3.0kb downstream 3.0kb downstream 7192   true Chr2: 14992565-14999756
AT2G35670 3.0kb downstream 3.0kb downstream 3000   false Chr2: 14996757-14999756

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Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016