help  | faq  | software  | ARAPORT

Gene : AT2G37400 A. thaliana

Gene ID  ? AT2G37400
Brief Description  Tetratricopeptide repeat (TPR)-like superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid lumen, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G53560.1).  Source: TAIR, Jun 30, 2015.

Locus History Displayer

Publication Counts Displayer

0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G37400 0.5kb upstream 0.5kb upstream 1970   true Chr2: 15695988-15697957
AT2G37400 0.5kb upstream 0.5kb upstream 500   false Chr2: 15697458-15697957
AT2G37400 0.5kb downstream 0.5kb downstream 1970   true Chr2: 15695488-15697457
AT2G37400 0.5kb downstream 0.5kb downstream 500   false Chr2: 15695488-15695987
AT2G37400 1.0kb upstream 1.0kb upstream 2470   true Chr2: 15695988-15698457
AT2G37400 1.0kb upstream 1.0kb upstream 1000   false Chr2: 15697458-15698457
AT2G37400 1.0kb downstream 1.0kb downstream 2470   true Chr2: 15694988-15697457
AT2G37400 1.0kb downstream 1.0kb downstream 1000   false Chr2: 15694988-15695987
AT2G37400 3.0kb upstream 3.0kb upstream 4470   true Chr2: 15695988-15700457
AT2G37400 3.0kb upstream 3.0kb upstream 3000   false Chr2: 15697458-15700457
AT2G37400 3.0kb downstream 3.0kb downstream 4470   true Chr2: 15692988-15697457
AT2G37400 3.0kb downstream 3.0kb downstream 3000   false Chr2: 15692988-15695987

Proteins

Protein Displayer


Function

Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0