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Gene : UBC6 A. thaliana

Gene ID  ? AT2G46030
Brief Description  ubiquitin-conjugating enzyme 6  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? ubiquitin-conjugating enzyme 6 (UBC6); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), Ubiquitin-conjugating enzyme (InterPro:IPR015581); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 5 (TAIR:AT1G63800.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Ubiquitin conjugating enzyme E2  Source: TAIR, Jun 30, 2015.
Name  ? ubiquitin-conjugating enzyme 6

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT2G46030 0.5kb upstream 0.5kb upstream 2620   true Chr2: 18932019-18934638
AT2G46030 0.5kb upstream 0.5kb upstream 500   false Chr2: 18934139-18934638
AT2G46030 0.5kb downstream 0.5kb downstream 2620   true Chr2: 18931519-18934138
AT2G46030 0.5kb downstream 0.5kb downstream 500   false Chr2: 18931519-18932018
AT2G46030 1.0kb upstream 1.0kb upstream 3120   true Chr2: 18932019-18935138
AT2G46030 1.0kb upstream 1.0kb upstream 1000   false Chr2: 18934139-18935138
AT2G46030 1.0kb downstream 1.0kb downstream 3120   true Chr2: 18931019-18934138
AT2G46030 1.0kb downstream 1.0kb downstream 1000   false Chr2: 18931019-18932018
AT2G46030 3.0kb upstream 3.0kb upstream 5120   true Chr2: 18932019-18937138
AT2G46030 3.0kb upstream 3.0kb upstream 3000   false Chr2: 18934139-18937138
AT2G46030 3.0kb downstream 3.0kb downstream 5120   true Chr2: 18929019-18934138
AT2G46030 3.0kb downstream 3.0kb downstream 3000   false Chr2: 18929019-18932018

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
04120 Ubiquitin mediated proteolysis

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Expression

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139