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Gene : AT3G10845 A. thaliana

Gene ID  ? AT3G10845
Brief Description  RNA-binding (RRM/RBD/RNP motifs) family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G45100.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G10845 0.5kb upstream 0.5kb upstream 4018   true Chr3: 3393509-3397526
AT3G10845 0.5kb upstream 0.5kb upstream 500   false Chr3: 3393509-3394008
AT3G10845 0.5kb downstream 0.5kb downstream 4018   true Chr3: 3394009-3398026
AT3G10845 0.5kb downstream 0.5kb downstream 500   false Chr3: 3397527-3398026
AT3G10845 1.0kb upstream 1.0kb upstream 4518   true Chr3: 3393009-3397526
AT3G10845 1.0kb upstream 1.0kb upstream 1000   false Chr3: 3393009-3394008
AT3G10845 1.0kb downstream 1.0kb downstream 4518   true Chr3: 3394009-3398526
AT3G10845 1.0kb downstream 1.0kb downstream 1000   false Chr3: 3397527-3398526
AT3G10845 3.0kb upstream 3.0kb upstream 6518   true Chr3: 3391009-3397526
AT3G10845 3.0kb upstream 3.0kb upstream 3000   false Chr3: 3391009-3394008
AT3G10845 3.0kb downstream 3.0kb downstream 6518   true Chr3: 3394009-3400526
AT3G10845 3.0kb downstream 3.0kb downstream 3000   false Chr3: 3397527-3400526

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0 Pathways

Data Source: KEGG

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7 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0