help  | faq  | software  | ARAPORT

Gene : CIPK7 A. thaliana

Gene ID  ? AT3G23000
Brief Description  CBL-interacting protein kinase 7  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? CBL-interacting protein kinase 7 (CIPK7); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 4 (TAIR:AT4G14580.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a serine/threonine protein kinase with similarities to CBL-interacting protein kinases, SNF1 and SOS2.  Source: TAIR, Jun 30, 2015.
Name  ? CBL-interacting protein kinase 7
  • synonyms:
  • PKS7,
  • ATSRPK1,
  • SnRK3.10,
  • ATSR2

Locus History Displayer

Publication Counts Displayer

2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
CIPK7, after being activated by CBL1, may regulate the activity of other protein components involved in cold responses. 21600398
CIPK7 of Arabidopsis binds the C-terminal domain of the readthrough protein of Turnip yellows virus and regulates virus. 26402374


Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G23000 0.5kb upstream 0.5kb upstream 2164   true Chr3: 8171979-8174142
AT3G23000 0.5kb upstream 0.5kb upstream 500   false Chr3: 8171979-8172478
AT3G23000 0.5kb downstream 0.5kb downstream 2164   true Chr3: 8172479-8174642
AT3G23000 0.5kb downstream 0.5kb downstream 500   false Chr3: 8174143-8174642
AT3G23000 1.0kb upstream 1.0kb upstream 2664   true Chr3: 8171479-8174142
AT3G23000 1.0kb upstream 1.0kb upstream 1000   false Chr3: 8171479-8172478
AT3G23000 1.0kb downstream 1.0kb downstream 2664   true Chr3: 8172479-8175142
AT3G23000 1.0kb downstream 1.0kb downstream 1000   false Chr3: 8174143-8175142
AT3G23000 3.0kb upstream 3.0kb upstream 4664   true Chr3: 8169479-8174142
AT3G23000 3.0kb upstream 3.0kb upstream 3000   false Chr3: 8169479-8172478
AT3G23000 3.0kb downstream 3.0kb downstream 4664   true Chr3: 8172479-8177142
AT3G23000 3.0kb downstream 3.0kb downstream 3000   false Chr3: 8174143-8177142


Protein Displayer


Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression


Save / Export






Cytoscape Network Displayer


Homologue Displayer

Phytomine Ortholog Displayer


Alelle Table Displayer

Stock Gene Table Displayer



11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139