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Gene : CIPK7 A. thaliana

Gene ID  ? AT3G23000
Brief Description  CBL-interacting protein kinase 7  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? CBL-interacting protein kinase 7 (CIPK7); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 4 (TAIR:AT4G14580.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a serine/threonine protein kinase with similarities to CBL-interacting protein kinases, SNF1 and SOS2.  Source: TAIR, Jun 30, 2015.
Name  ? CBL-interacting protein kinase 7
  • synonyms:
  • PKS7,
  • ATSRPK1,
  • SNF1-RELATED PROTEIN KINASE 3.10,
  • SnRK3.10,
  • ATSR2

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
CIPK7, after being activated by CBL1, may regulate the activity of other protein components involved in cold responses. 21600398
CIPK7 of Arabidopsis binds the C-terminal domain of the readthrough protein of Turnip yellows virus and regulates virus. 26402374

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G23000 0.5kb upstream 0.5kb upstream 2164   true Chr3: 8171979-8174142
AT3G23000 0.5kb upstream 0.5kb upstream 500   false Chr3: 8171979-8172478
AT3G23000 0.5kb downstream 0.5kb downstream 2164   true Chr3: 8172479-8174642
AT3G23000 0.5kb downstream 0.5kb downstream 500   false Chr3: 8174143-8174642
AT3G23000 1.0kb upstream 1.0kb upstream 2664   true Chr3: 8171479-8174142
AT3G23000 1.0kb upstream 1.0kb upstream 1000   false Chr3: 8171479-8172478
AT3G23000 1.0kb downstream 1.0kb downstream 2664   true Chr3: 8172479-8175142
AT3G23000 1.0kb downstream 1.0kb downstream 1000   false Chr3: 8174143-8175142
AT3G23000 3.0kb upstream 3.0kb upstream 4664   true Chr3: 8169479-8174142
AT3G23000 3.0kb upstream 3.0kb upstream 3000   false Chr3: 8169479-8172478
AT3G23000 3.0kb downstream 3.0kb downstream 4664   true Chr3: 8172479-8177142
AT3G23000 3.0kb downstream 3.0kb downstream 3000   false Chr3: 8174143-8177142

Proteins

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0 Pathways

Data Source: KEGG

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Interactions

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139