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Gene : ABCA2 A. thaliana

Gene ID  ? AT3G47730
Brief Description  ATP-binding cassette A2  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? ATP-binding cassette A2 (ABCA2); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: response to cyclopentenone; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC2 homolog 11 (TAIR:AT5G61730.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? member of ATH subfamily  Source: TAIR, Jun 30, 2015.
Name  ? ATP-binding cassette A2
  • synonyms:
  • ABC2 homolog 1,
  • ATH1,
  • ATATH1,
  • A. THALIANA ABC2 HOMOLOG 1

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G47730 0.5kb upstream 0.5kb upstream 5524   true Chr3: 17594060-17599583
AT3G47730 0.5kb upstream 0.5kb upstream 500   false Chr3: 17599084-17599583
AT3G47730 0.5kb downstream 0.5kb downstream 5524   true Chr3: 17593560-17599083
AT3G47730 0.5kb downstream 0.5kb downstream 500   false Chr3: 17593560-17594059
AT3G47730 1.0kb upstream 1.0kb upstream 6024   true Chr3: 17594060-17600083
AT3G47730 1.0kb upstream 1.0kb upstream 1000   false Chr3: 17599084-17600083
AT3G47730 1.0kb downstream 1.0kb downstream 6024   true Chr3: 17593060-17599083
AT3G47730 1.0kb downstream 1.0kb downstream 1000   false Chr3: 17593060-17594059
AT3G47730 3.0kb upstream 3.0kb upstream 8024   true Chr3: 17594060-17602083
AT3G47730 3.0kb upstream 3.0kb upstream 3000   false Chr3: 17599084-17602083
AT3G47730 3.0kb downstream 3.0kb downstream 8024   true Chr3: 17591060-17599083
AT3G47730 3.0kb downstream 3.0kb downstream 3000   false Chr3: 17591060-17594059

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0