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Gene : CPSUFE A. thaliana

Gene ID  ? AT4G26500
Brief Description  chloroplast sulfur E  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? chloroplast sulfur E (CPSUFE); FUNCTIONS IN: enzyme activator activity, transcription regulator activity; INVOLVED IN: iron-sulfur cluster assembly, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fe-S metabolism associated SufE (InterPro:IPR003808), BolA-like protein (InterPro:IPR002634); BEST Arabidopsis thaliana protein match is: BolA-like family protein (TAIR:AT1G55805.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Sulfur acceptor that interacts with and activates the cysteine desulfurases, AtSufS in plastids and AtNifS1 in mitochondria, and both activations are vital during embryogenesis. Dual localization in mitochondria and chloroplasts. Involved in Fe-S cluster biogenesis in mitochondria and plastids. Expressed in all major tissues, with higher expression in green parts. Its expression is light-dependent and regulated at the mRNA level. Activates the cysteine desulfurase activity of CpNifS for chloroplastic iron-sulfur cluster biogenesis.  Source: TAIR, Jun 30, 2015.
Name  ? chloroplast sulfur E
  • synonyms:
  • MBRYO DEFECTIVE 1374,
  • EMB1374,
  • SUFE1,
  • ARABIDOPSIS THALIANA SULFUR E,
  • SULFUR E 1,
  • ATSUFE

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3 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
SufE3 is the NadA enzyme of A. thaliana, involved in a critical step during NAD biosynthesis 17452319
glutaredoxin-BolA interaction occurs in several subcellular compartments and suggest that a redox regulation mechanism, disconnected from their capacity to form iron-sulfur cluster-bridged heterodimers, may be physiologically relevant for BolA2 and SufE1. [SufE1] 24203231
contains a conserved cysteine that is sensitive to oxidizing treatments, unraveling a possible redox-control of BolA2 and SufE1 by monothiol glutaredoxins 24714563

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G26500 0.5kb upstream 0.5kb upstream 2428   true Chr4: 13381714-13384141
AT4G26500 0.5kb upstream 0.5kb upstream 500   false Chr4: 13383642-13384141
AT4G26500 0.5kb downstream 0.5kb downstream 2428   true Chr4: 13381214-13383641
AT4G26500 0.5kb downstream 0.5kb downstream 500   false Chr4: 13381214-13381713
AT4G26500 1.0kb upstream 1.0kb upstream 2928   true Chr4: 13381714-13384641
AT4G26500 1.0kb upstream 1.0kb upstream 1000   false Chr4: 13383642-13384641
AT4G26500 1.0kb downstream 1.0kb downstream 2928   true Chr4: 13380714-13383641
AT4G26500 1.0kb downstream 1.0kb downstream 1000   false Chr4: 13380714-13381713
AT4G26500 3.0kb upstream 3.0kb upstream 4928   true Chr4: 13381714-13386641
AT4G26500 3.0kb upstream 3.0kb upstream 3000   false Chr4: 13383642-13386641
AT4G26500 3.0kb downstream 3.0kb downstream 4928   true Chr4: 13378714-13383641
AT4G26500 3.0kb downstream 3.0kb downstream 3000   false Chr4: 13378714-13381713

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0 Pathways

Data Source: KEGG

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139