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Gene : AT4G31790 A. thaliana

Gene ID  ? AT4G31790
Brief Description  Tetrapyrrole (Corrin/Porphyrin) Methylase  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Tetrapyrrole (Corrin/Porphyrin) Methylases; FUNCTIONS IN: methyltransferase activity, diphthine synthase activity; INVOLVED IN: peptidyl-diphthamide biosynthetic process from peptidyl-histidine, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Diphthine synthase (InterPro:IPR004551), Tetrapyrrole methylase (InterPro:IPR000878), Tetrapyrrole methylase, subdomain 1 (InterPro:IPR014777), Tetrapyrrole methylase, subdomain 2 (InterPro:IPR014776).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G31790 0.5kb upstream 0.5kb upstream 2368   true Chr4: 15376658-15379025
AT4G31790 0.5kb upstream 0.5kb upstream 500   false Chr4: 15376658-15377157
AT4G31790 0.5kb downstream 0.5kb downstream 2368   true Chr4: 15377158-15379525
AT4G31790 0.5kb downstream 0.5kb downstream 500   false Chr4: 15379026-15379525
AT4G31790 1.0kb upstream 1.0kb upstream 2868   true Chr4: 15376158-15379025
AT4G31790 1.0kb upstream 1.0kb upstream 1000   false Chr4: 15376158-15377157
AT4G31790 1.0kb downstream 1.0kb downstream 2868   true Chr4: 15377158-15380025
AT4G31790 1.0kb downstream 1.0kb downstream 1000   false Chr4: 15379026-15380025
AT4G31790 3.0kb upstream 3.0kb upstream 4868   true Chr4: 15374158-15379025
AT4G31790 3.0kb upstream 3.0kb upstream 3000   false Chr4: 15374158-15377157
AT4G31790 3.0kb downstream 3.0kb downstream 4868   true Chr4: 15377158-15382025
AT4G31790 3.0kb downstream 3.0kb downstream 3000   false Chr4: 15379026-15382025

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Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0