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Gene : EMB2730 A. thaliana

Gene ID  ? AT5G02250
Brief Description  Ribonuclease II/R family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? EMBRYO DEFECTIVE 2730 (EMB2730); FUNCTIONS IN: ribonuclease activity, 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: chloroplast organization, rRNA processing, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease II/R (InterPro:IPR001900); BEST Arabidopsis thaliana protein match is: ribonuclease II family protein (TAIR:AT2G17510.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a exoribonuclease involved in rRNA processing in mitochondria and chloroplasts.Loss of function mutations are pale green and require supplementation with sucrose for germination and early development. Plants are pale green due to defects in chloroplast biogenesis.  Source: TAIR, Jun 30, 2015.
Name  ? EMBRYO DEFECTIVE 2730
  • synonyms:
  • ribonucleotide reductase 1,
  • ATMTRNASEII,
  • RNR1,
  • ARABIDOPSIS THALIANA MITOCHONDRIAL RNASE II

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
RNR1,(At5g02250), catalyzes 3' maturation of chloroplast ribosomal RNAs. 15891117

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G02250 0.5kb upstream 0.5kb upstream 5420   true Chr5: 454277-459696
AT5G02250 0.5kb upstream 0.5kb upstream 500   false Chr5: 454277-454776
AT5G02250 0.5kb downstream 0.5kb downstream 5420   true Chr5: 454777-460196
AT5G02250 0.5kb downstream 0.5kb downstream 500   false Chr5: 459697-460196
AT5G02250 1.0kb upstream 1.0kb upstream 5920   true Chr5: 453777-459696
AT5G02250 1.0kb upstream 1.0kb upstream 1000   false Chr5: 453777-454776
AT5G02250 1.0kb downstream 1.0kb downstream 5920   true Chr5: 454777-460696
AT5G02250 1.0kb downstream 1.0kb downstream 1000   false Chr5: 459697-460696
AT5G02250 3.0kb upstream 3.0kb upstream 7920   true Chr5: 451777-459696
AT5G02250 3.0kb upstream 3.0kb upstream 3000   false Chr5: 451777-454776
AT5G02250 3.0kb downstream 3.0kb downstream 7920   true Chr5: 454777-462696
AT5G02250 3.0kb downstream 3.0kb downstream 3000   false Chr5: 459697-462696

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0 Pathways

Data Source: KEGG

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Expression

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016