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Gene : emb2735 A. thaliana

Gene ID  ? AT5G06240
Brief Description  embryo defective 2735  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? embryo defective 2735 (emb2735).  Source: TAIR, Jun 30, 2015.
Name  ? embryo defective 2735

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G06240 0.5kb upstream 0.5kb upstream 2165   true Chr5: 1887750-1889914
AT5G06240 0.5kb upstream 0.5kb upstream 500   false Chr5: 1887750-1888249
AT5G06240 0.5kb downstream 0.5kb downstream 2165   true Chr5: 1888250-1890414
AT5G06240 0.5kb downstream 0.5kb downstream 500   false Chr5: 1889915-1890414
AT5G06240 1.0kb upstream 1.0kb upstream 2665   true Chr5: 1887250-1889914
AT5G06240 1.0kb upstream 1.0kb upstream 1000   false Chr5: 1887250-1888249
AT5G06240 1.0kb downstream 1.0kb downstream 2665   true Chr5: 1888250-1890914
AT5G06240 1.0kb downstream 1.0kb downstream 1000   false Chr5: 1889915-1890914
AT5G06240 3.0kb upstream 3.0kb upstream 4665   true Chr5: 1885250-1889914
AT5G06240 3.0kb upstream 3.0kb upstream 3000   false Chr5: 1885250-1888249
AT5G06240 3.0kb downstream 3.0kb downstream 4665   true Chr5: 1888250-1892914
AT5G06240 3.0kb downstream 3.0kb downstream 3000   false Chr5: 1889915-1892914

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0 Pathways

Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139