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Gene : APT5 A. thaliana

Gene ID  ? AT5G11160
Brief Description  adenine phosphoribosyltransferase 5  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? adenine phosphoribosyltransferase 5 (APT5); FUNCTIONS IN: adenine phosphoribosyltransferase activity; INVOLVED IN: nucleoside metabolic process, adenine salvage, anaerobic respiration, nucleotide metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenine phosphoribosyl transferase (InterPro:IPR005764), Phosphoribosyltransferase (InterPro:IPR000836); BEST Arabidopsis thaliana protein match is: adenine phosphoribosyl transferase 2 (TAIR:AT1G80050.1).  Source: TAIR, Jun 30, 2015.
Name  ? adenine phosphoribosyltransferase 5

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G11160 0.5kb upstream 0.5kb upstream 2456   true Chr5: 3549800-3552255
AT5G11160 0.5kb upstream 0.5kb upstream 500   false Chr5: 3549800-3550299
AT5G11160 0.5kb downstream 0.5kb downstream 2456   true Chr5: 3550300-3552755
AT5G11160 0.5kb downstream 0.5kb downstream 500   false Chr5: 3552256-3552755
AT5G11160 1.0kb upstream 1.0kb upstream 2956   true Chr5: 3549300-3552255
AT5G11160 1.0kb upstream 1.0kb upstream 1000   false Chr5: 3549300-3550299
AT5G11160 1.0kb downstream 1.0kb downstream 2956   true Chr5: 3550300-3553255
AT5G11160 1.0kb downstream 1.0kb downstream 1000   false Chr5: 3552256-3553255
AT5G11160 3.0kb upstream 3.0kb upstream 4956   true Chr5: 3547300-3552255
AT5G11160 3.0kb upstream 3.0kb upstream 3000   false Chr5: 3547300-3550299
AT5G11160 3.0kb downstream 3.0kb downstream 4956   true Chr5: 3550300-3555255
AT5G11160 3.0kb downstream 3.0kb downstream 3000   false Chr5: 3552256-3555255

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2 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
00230 Purine metabolism

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Expression

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Interactions

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139