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Gene : cwINV6 A. thaliana

Gene ID  ? AT5G11920
Brief Description  6-&1-fructan exohydrolase  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? 6-&1-fructan exohydrolase (cwINV6); FUNCTIONS IN: inulinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, levanase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 32 (InterPro:IPR001362), Glycoside hydrolase, family 32, active site (InterPro:IPR018053), Glycosyl hydrolases family 32, N-terminal (InterPro:IPR013148), Glycosyl hydrolase family 32, C-terminal (InterPro:IPR013189), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: beta-fructofuranosidase 5 (TAIR:AT1G55120.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity.  Source: TAIR, Jun 30, 2015.
Name  ? 6-&1-fructan exohydrolase
  • synonyms:
  • 6-&1-fructan exohydrolase,
  • AtcwINV6

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G11920 0.5kb upstream 0.5kb upstream 3594   true Chr5: 3838816-3842409
AT5G11920 0.5kb upstream 0.5kb upstream 500   false Chr5: 3838816-3839315
AT5G11920 0.5kb downstream 0.5kb downstream 3594   true Chr5: 3839316-3842909
AT5G11920 0.5kb downstream 0.5kb downstream 500   false Chr5: 3842410-3842909
AT5G11920 1.0kb upstream 1.0kb upstream 4094   true Chr5: 3838316-3842409
AT5G11920 1.0kb upstream 1.0kb upstream 1000   false Chr5: 3838316-3839315
AT5G11920 1.0kb downstream 1.0kb downstream 4094   true Chr5: 3839316-3843409
AT5G11920 1.0kb downstream 1.0kb downstream 1000   false Chr5: 3842410-3843409
AT5G11920 3.0kb upstream 3.0kb upstream 6094   true Chr5: 3836316-3842409
AT5G11920 3.0kb upstream 3.0kb upstream 3000   false Chr5: 3836316-3839315
AT5G11920 3.0kb downstream 3.0kb downstream 6094   true Chr5: 3839316-3845409
AT5G11920 3.0kb downstream 3.0kb downstream 3000   false Chr5: 3842410-3845409

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3 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
00500 Starch and sucrose metabolism
00052 Galactose metabolism

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016