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Gene : CAC1 A. thaliana

Gene ID  ? AT5G16390
Brief Description  chloroplastic acetylcoenzyme A carboxylase 1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? chloroplastic acetylcoenzyme A carboxylase 1 (CAC1); FUNCTIONS IN: acetyl-CoA carboxylase activity, biotin binding; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Biotin-binding site (InterPro:IPR001882), Single hybrid motif (InterPro:IPR011053), Acetyl-CoA biotin carboxyl carrier (InterPro:IPR001249), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: biotin carboxyl carrier protein 2 (TAIR:AT5G15530.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes for the biotin carboxyl-carrier subunit of the multi-enzyme plastidial acetyl-coenzyme A carboxylase complex.  Source: TAIR, Jun 30, 2015.
Name  ? chloroplastic acetylcoenzyme A carboxylase 1
  • synonyms:
  • BIOTIN CARBOXYL CARRIER PROTEIN,
  • BIOTIN CARBOXYL-CARRIER PROTEIN 1,
  • CAC1A,
  • BCCP1,
  • BIOTIN CARBOXYL-CARRIER PROTEIN 1,
  • BCCP,
  • BCCP-1

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
BCCP1 protein can compensate for the lack of BCCP2, the absence of BCCP1 cannot be tolerated as BCCP2 levels are not sufficient to support heteromeric acetyl-coenzyme A carboxylase activity at a level that is required for normal growth and development. 21030508

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G16390 0.5kb upstream 0.5kb upstream 3009   true Chr5: 5360789-5363797
AT5G16390 0.5kb upstream 0.5kb upstream 500   false Chr5: 5363298-5363797
AT5G16390 0.5kb downstream 0.5kb downstream 3009   true Chr5: 5360289-5363297
AT5G16390 0.5kb downstream 0.5kb downstream 500   false Chr5: 5360289-5360788
AT5G16390 1.0kb upstream 1.0kb upstream 3509   true Chr5: 5360789-5364297
AT5G16390 1.0kb upstream 1.0kb upstream 1000   false Chr5: 5363298-5364297
AT5G16390 1.0kb downstream 1.0kb downstream 3509   true Chr5: 5359789-5363297
AT5G16390 1.0kb downstream 1.0kb downstream 1000   false Chr5: 5359789-5360788
AT5G16390 3.0kb upstream 3.0kb upstream 5509   true Chr5: 5360789-5366297
AT5G16390 3.0kb upstream 3.0kb upstream 3000   false Chr5: 5363298-5366297
AT5G16390 3.0kb downstream 3.0kb downstream 5509   true Chr5: 5357789-5363297
AT5G16390 3.0kb downstream 3.0kb downstream 3000   false Chr5: 5357789-5360788

Proteins

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7 Pathways

Data Source: KEGG

Identifier Name
00620 Pyruvate metabolism
01100 Metabolic pathways
01110 Biosynthesis of secondary metabolites
01200 Carbon metabolism
01212 Fatty acid metabolism
00640 Propanoate metabolism
00061 Fatty acid biosynthesis

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Expression

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139