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Transposable Element Gene : AT5G20880 A. thaliana

Gene ID  AT5G20880 Brief Description  transposable_element_gene  Source: Araport11 (06/2016).
Is Obsolete?  false Computational Description  retrotransposon family  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G20880 0.5kb upstream 0.5kb upstream 1623   true Chr5: 7082104-7083726
AT5G20880 0.5kb upstream 0.5kb upstream 500   false Chr5: 7083227-7083726
AT5G20880 0.5kb downstream 0.5kb downstream 1623   true Chr5: 7081604-7083226
AT5G20880 0.5kb downstream 0.5kb downstream 500   false Chr5: 7081604-7082103
AT5G20880 1.0kb upstream 1.0kb upstream 2123   true Chr5: 7082104-7084226
AT5G20880 1.0kb upstream 1.0kb upstream 1000   false Chr5: 7083227-7084226
AT5G20880 1.0kb downstream 1.0kb downstream 2123   true Chr5: 7081104-7083226
AT5G20880 1.0kb downstream 1.0kb downstream 1000   false Chr5: 7081104-7082103
AT5G20880 3.0kb upstream 3.0kb upstream 4123   true Chr5: 7082104-7086226
AT5G20880 3.0kb upstream 3.0kb upstream 3000   false Chr5: 7083227-7086226
AT5G20880 3.0kb downstream 3.0kb downstream 4123   true Chr5: 7079104-7083226
AT5G20880 3.0kb downstream 3.0kb downstream 3000   false Chr5: 7079104-7082103

Proteins

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Function

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Gene --> Ontology term

Gene --> Pathways


Expression

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Array Expression

RNA-seq Expression



Interactions

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Homology

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Stocks

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Other

4 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015