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Gene : emb1211 A. thaliana

Gene ID  ? AT5G22640
Brief Description  MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? embryo defective 1211 (emb1211); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: chloroplast organization, embryo development, embryo development ending in seed dormancy; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MORN motif (InterPro:IPR003409).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? EMB1211 is a MORN (multiple membrane occupation and recognition nexus) motif containing protein involved in embryo development and chloroplast biogenesis.  Source: TAIR, Jun 30, 2015.
Name  ? embryo defective 1211
  • synonyms:
  • TIC100

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
The data indicate that EMB1211 has an important role during embryogenesis and chloroplast biogenesis in Arabidopsis. 20738804


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G22640 0.5kb upstream 0.5kb upstream 5066   true Chr5: 7528792-7533857
AT5G22640 0.5kb upstream 0.5kb upstream 500   false Chr5: 7528792-7529291
AT5G22640 0.5kb downstream 0.5kb downstream 5066   true Chr5: 7529292-7534357
AT5G22640 0.5kb downstream 0.5kb downstream 500   false Chr5: 7533858-7534357
AT5G22640 1.0kb upstream 1.0kb upstream 5566   true Chr5: 7528292-7533857
AT5G22640 1.0kb upstream 1.0kb upstream 1000   false Chr5: 7528292-7529291
AT5G22640 1.0kb downstream 1.0kb downstream 5566   true Chr5: 7529292-7534857
AT5G22640 1.0kb downstream 1.0kb downstream 1000   false Chr5: 7533858-7534857
AT5G22640 3.0kb upstream 3.0kb upstream 7566   true Chr5: 7526292-7533857
AT5G22640 3.0kb upstream 3.0kb upstream 3000   false Chr5: 7526292-7529291
AT5G22640 3.0kb downstream 3.0kb downstream 7566   true Chr5: 7529292-7536857
AT5G22640 3.0kb downstream 3.0kb downstream 3000   false Chr5: 7533858-7536857


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0 Pathways

Data Source: KEGG

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139