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Gene : ERS A. thaliana

Gene ID  ? AT5G64050
Brief Description  glutamate tRNA synthetase  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? glutamate tRNA synthetase (ERS); FUNCTIONS IN: protein binding, glutamate-tRNA ligase activity; INVOLVED IN: chloroplast organization, glutamyl-tRNA aminoacylation, mitochondrion organization, tRNA aminoacylation, ovule development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Glutamyl/glutaminyl-tRNA synthetase, class Ic, alpha-bundle domain (InterPro:IPR020061), Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial (InterPro:IPR004527), Glutamyl/glutaminyl-tRNA synthetase, class Ic, N-terminal (InterPro:IPR020060), Aminoacyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR008925), Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain (InterPro:IPR020058), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamyl/glutaminyl-tRNA synthetase, class Ic (InterPro:IPR000924), Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 (InterPro:IPR020751); BEST Arabidopsis thaliana protein match is: Glutamyl/glutaminyl-tRNA synthetase, class Ic (TAIR:AT5G26710.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.  Source: TAIR, Jun 30, 2015.
Name  ? glutamate tRNA synthetase
  • synonyms:
  • ATERS,
  • OVA3,
  • OVULE ABORTION 3

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT5G64050 0.5kb upstream 0.5kb upstream 3878   true Chr5: 25629832-25633709
AT5G64050 0.5kb upstream 0.5kb upstream 500   false Chr5: 25633210-25633709
AT5G64050 0.5kb downstream 0.5kb downstream 3878   true Chr5: 25629332-25633209
AT5G64050 0.5kb downstream 0.5kb downstream 500   false Chr5: 25629332-25629831
AT5G64050 1.0kb upstream 1.0kb upstream 4378   true Chr5: 25629832-25634209
AT5G64050 1.0kb upstream 1.0kb upstream 1000   false Chr5: 25633210-25634209
AT5G64050 1.0kb downstream 1.0kb downstream 4378   true Chr5: 25628832-25633209
AT5G64050 1.0kb downstream 1.0kb downstream 1000   false Chr5: 25628832-25629831
AT5G64050 3.0kb upstream 3.0kb upstream 6378   true Chr5: 25629832-25636209
AT5G64050 3.0kb upstream 3.0kb upstream 3000   false Chr5: 25633210-25636209
AT5G64050 3.0kb downstream 3.0kb downstream 6378   true Chr5: 25626832-25633209
AT5G64050 3.0kb downstream 3.0kb downstream 3000   false Chr5: 25626832-25629831

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4 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
01110 Biosynthesis of secondary metabolites
00860 Porphyrin and chlorophyll metabolism
00970 Aminoacyl-tRNA biosynthesis

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139