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Gene : WRKY68 A. thaliana

Gene ID  ? AT3G62340
Brief Description  WRKY family transcription factor  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? WRKY68; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY group IIc (InterPro:IPR017396); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 23 (TAIR:AT2G47260.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? member of WRKY Transcription Factor; Group II-c  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G62340 0.5kb upstream 0.5kb upstream 2219   true Chr3: 23069489-23071707
AT3G62340 0.5kb upstream 0.5kb upstream 500   false Chr3: 23071208-23071707
AT3G62340 0.5kb downstream 0.5kb downstream 2219   true Chr3: 23068989-23071207
AT3G62340 0.5kb downstream 0.5kb downstream 500   false Chr3: 23068989-23069488
AT3G62340 1.0kb upstream 1.0kb upstream 2719   true Chr3: 23069489-23072207
AT3G62340 1.0kb upstream 1.0kb upstream 1000   false Chr3: 23071208-23072207
AT3G62340 1.0kb downstream 1.0kb downstream 2719   true Chr3: 23068489-23071207
AT3G62340 1.0kb downstream 1.0kb downstream 1000   false Chr3: 23068489-23069488
AT3G62340 3.0kb upstream 3.0kb upstream 4719   true Chr3: 23069489-23074207
AT3G62340 3.0kb upstream 3.0kb upstream 3000   false Chr3: 23071208-23074207
AT3G62340 3.0kb downstream 3.0kb downstream 4719   true Chr3: 23066489-23071207
AT3G62340 3.0kb downstream 3.0kb downstream 3000   false Chr3: 23066489-23069488

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0 Pathways

Data Source: KEGG

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7 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0